--- title: Use PRQL with knitr output: rmarkdown::html_vignette vignette: > %\VignetteIndexEntry{Use PRQL with knitr} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8} --- Loading `{prqlr}` makes the `prql` code chunks executable in R Markdown and Quarto Markdown files. ## Output formats It can either output the results of the actual query execution or display a SQL query compiled from a PRQL query. ### Use with `{DBI}` connections If using with database connections (set the name of `{DBI}` connection to the `connection` chunk option), PRQL code chunks pass the output SQL to `{knitr}`'s SQL engine and behaves like [SQL code chunks](https://bookdown.org/yihui/rmarkdown/language-engines.html#sql). So, usage is the same as for SQL code chunks. For example, let's render an R Markdown file named `test.Rmd` with the following contents with the `knitr::knit()` function. ````{r} #| echo: false #| results: asis # Override the default SQL print function to avoid inserting '
' # https://github.com/yihui/xaringan/issues/307 knitr::opts_knit$set(sql.print = \(x) paste(knitr::kable(x, format = "markdown"), collapse = "\n")) src_with_con <- r"( ```{r} #| echo: false library(DBI) library(prqlr) con <- dbConnect(RSQLite::SQLite(), ":memory:") dbWriteTable(con, "mtcars", mtcars) ``` ```{prql} #| connection: con from mtcars filter cyl > 6 select {cyl, mpg} derive {mpg_int = math.round 0 mpg} take 3 ``` )" cat("````markdown", src_with_con, "````", sep = "") ```` After rendering, a Markdown file named `test.md` is generated with the following contents. ````{r} #| echo: false #| results: asis cat( "````markdown", knitr::knit_child(text = src_with_con, quiet = TRUE), "````", sep = "" ) ```` Note that the syntax highlighting of Elm is the best for PRQL, so the output code blocks are marked as `elm`. This can be changed by setting the `lang` chunk option. ### Without database connections PRQL code chunks without the `connection` option will generate SQL code blocks. ````{r} #| echo: false #| results: asis src_without_con <- r"( ```{r} #| echo: false library(prqlr) ``` ```{prql} from mtcars filter cyl > 6 select {cyl, mpg} derive {mpg_int = math.round 0 mpg} take 3 ``` )" cat("````markdown", src_without_con, "````", sep = "") ```` The R Markdown file above will be converted to the Markdown file below. ````{r} #| echo: false #| results: asis cat( "````markdown", knitr::knit_child(text = src_without_con, quiet = TRUE), "````", sep = "" ) ```` ## Engine options ### Compiler options We can pass some options of `prql_compile()` via the chunk option `engine-opts` (or `engine.opts`). Note that the `format` option is always `TRUE` for PRQL code chunks. ````{r} #| echo: false #| results: asis src_engine_opts <- r"( ```{r} #| echo: false library(prqlr) ``` ## YAML-style ```{prql} #| engine-opts: #| target: sql.mssql #| signature_comment: false from mtcars take 3 ``` ## R-style ```{prql engine.opts=list(target="sql.mssql", signature_comment=FALSE)} from mtcars take 3 ``` )" # Check if it can be rendered invisible(knitr::knit_child(text = src_engine_opts, quiet = TRUE)) cat("````markdown", src_engine_opts, "````", sep = "") ```` ### Parameterized PRQL code blocks The experimental engine option `use_glue` can be used to insert R variables into PRQL queries. Characters enclosed in `{{` and `}}` are replaced by the `glue::glue()` function before being passed to the `prql_compile()` function. ````{r} #| echo: false #| results: asis src_glue <- r"( ```{r} #| echo: false library(prqlr) cyl_min <- 6 derive_or_select <- "derive" ``` ```{prql} #| engine-opts: #| use_glue: true from mtcars filter cyl > {{cyl_min}} select {cyl, mpg} {{derive_or_select}} {mpg_int = math.round 0 mpg} take 3 ``` )" cat("````markdown", src_glue, "````", sep = "") ```` The R Markdown file above will be converted to the Markdown file below. ````{r} #| echo: false #| results: asis cat( "````markdown", knitr::knit_child(text = src_glue, quiet = TRUE), "````", sep = "" ) ```` #### Use query strings in R code blocks With the experimental `use_glue` option, the query string can even be defined completely in R side. ````{r} #| echo: false #| results: asis src_query_from_r <- r"( ```{r} #| echo: false library(prqlr) prql_query <- "from mtcars select cyl" ``` ```{prql} #| engine-opts: #| use_glue: true {{prql_query}} ``` )" cat("````markdown", src_query_from_r, "````", sep = "") ```` This example outputs the following. ````{r} #| echo: false #| results: asis cat( "````markdown", knitr::knit_child(text = src_query_from_r, quiet = TRUE), "````", sep = "" ) ```` ### Set special info string to output SQL code blocks When making SQL code blocks output without a DB connection, the `info_string` option can be used to control the info string of the output code block. This is convenient when we want to add special attributes that are used in Quarto Markdown files. The default value is `"sql"`. For example, the following R Markdown file includes a PRQL code block with the `info_string` option will be converted to... ````{r} #| echo: false #| results: asis src_info_string <- r"( ```{r} #| echo: false library(prqlr) ``` ```{prql} #| engine-opts: #| info_string: '{.sql filename="SQL"}' from mtcars take 3 ``` )" cat("````markdown", src_info_string, "````", sep = "") ```` This Markdown file. ````{r} #| echo: false #| results: asis cat( "````markdown", knitr::knit_child(text = src_info_string, quiet = TRUE), "````", sep = "" ) ````